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SRX2998673: GSM2701508: 4_Pang_Tn_aTP315_2; Staphylococcus aureus subsp. aureus NCTC 8325; Tn-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 20.7M spots, 2.1G bases, 1.5Gb downloads

Submitted by: NCBI (GEO)
Study: The nucleoid occlusion factor Noc controls DNA replication initiation in Staphylococcus aureus [Tn-seq]
show Abstracthide Abstract
Successive division events in the spherically shaped bacterium Staphylococcus aureus are oriented in three alternating perpendicular planes. The mechanisms that underlie this relatively unique pattern of division and coordinate it with chromosome segregation remain largely unknown. Thus far, the only known spatial regulator of division in this organism is the nucleoid occlusion protein Noc that inhibits assembly of the cytokinetic ring over the chromosome. However, Noc is not essential in S. aureus, indicating that additional regulators are likely to exist. To search for these factors, we screened for mutants that are synthetic lethal with Noc inactivation. Our characterization of these mutants led to the discovery that S. aureus Noc also controls the initiation of DNA replication. We show that cells lacking Noc over-initiate and mutations in the initiator gene dnaA suppress this defect. Importantly, these dnaA mutations also partially suppress the division problems associated with ?noc. Reciprocally, we show that over-expression of DnaA enhances the over-initiation and cell division phenotypes of cells lacking Noc. Thus, a single factor both blocks cell division over chromosomes and helps to ensure that new rounds of DNA replication are not initiated prematurely. This degree of economy in coordinating key cell biological processes has not been observed in rod-shaped bacteria and may reflect the challenges posed by the reduced cell volume and complicated division pattern of this spherical pathogen. Overall design: Tn-seq experiments were performed on wild type and mutant cells of Staphylococcus aureus RN4220 (Nair et al,PMID: 21378186 ) growing in tryptic soy broth (TSB) at 30°C with aeration.
Sample: 4_Pang_Tn_aTP315_2
SAMN07346875 • SRS2349608 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: Tn-Seq
Source: GENOMIC
Selection: other
Layout: SINGLE
Construction protocol: Genomic DNA was extracted. Transposon-sequencing (Tn-seq) was adapted from Zhang et al (PMID: 23028335). Briefly, genomic DNA isolated from each library was sonicated to 200-400 bp fragments. Nicked ends were repaired (Quick Blunt kit, NEB), and dA-tails were added with Taq polymerase (NEB), followed by ligation of adapters using T4 ligase (NEB). Transposon-junctions were PCR-amplified using primers binding to adapter and transposon individually. PCR products were purified and incubated with the endonuclease NotI (NEB) to remove any contaminating DNA derived from the transposon plasmid. Finally, a second round of PCR was performed on 100 ng of each sample, using primers that contain barcode and illumina P5/P7 and sequencing primers. A 200-400 bp product was gel-purified.
Experiment attributes:
GEO Accession: GSM2701508
Links:
Runs: 1 run, 20.7M spots, 2.1G bases, 1.5Gb
Run# of Spots# of BasesSizePublished
SRR582077820,699,4142.1G1.5Gb2017-08-31

ID:
4270355

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